Stem-loop sequence dme-mir-984

Accession

MI0005842 (change log)

Description

Drosophila melanogaster miR-984 stem-loop

Literature search

3 open access papers mention dme-mir-984
(6 sentences)

Stem-loop

   ---a    ca      a     g     a        a  -uu  cu 
5'     gaaa  aauuuc uugag uaaau cgguugga uu   gu  u
       ||||  |||||| ||||| ||||| |||||||| ||   ||   
3'     cuuu  uuaaag ggcuc guuua gccaaccu aa   ca  u
   uuga    --      c     g     a        a  uau  au 

Deep sequencing

5286 reads, 386 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 4368646-4368735 [-]
• Overlapping transcripts:

  antisense

  FBtr0070652 ; CG3626-RA; intron 1

Clustered miRNAs

< 10kb from dme-mir-984

• dme-mir-984: chrX: 4368646-4368735 [-]
• dme-mir-983-2: chrX: 4368483-4368581 [-]
• dme-mir-983-1: chrX: 4368309-4368399 [-]
• dme-mir-303: chrX: 4366179-4366248 [-]
• dme-mir-982: chrX: 4365806-4365898 [-]

Database links

• RNAcentral:URS000046A799_7227
• miRBase Tracker:MI0005842

Mature sequence dme-miR-984-5p

• Accession: MIMAT0005500
• Previous IDs: dme-miR-984
• Sequence: 16 - ugagguaaauacgguuggaauuu - 38
• Deep sequencing: 5053 reads, 49 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000008CFBF_7227
• Predicted targets:
  • TargetScanFly:dme-miR-984
  • microrna.org:dme-miR-984-5p

Mature sequence dme-miR-984-3p

• Accession: MIMAT0020881
• Sequence: 55 - auccaaccgaauuuggcucg - 74
• Deep sequencing: 226 reads, 32 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000438746_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).