Stem-loop sequence dme-mir-985

Accession

MI0005844 (change log)

Description

Drosophila melanogaster miR-985 stem-loop

Literature search

3 open access papers mention dme-mir-985
(5 sentences)

Stem-loop

   ---uau        a     g cu      u      c       
5'       auaauagc cugcu g  cauugg acauuu auaagu 
         |||||||| ||||| |  |||||| |||||| ||||| a
3'       uauuaucg gacgg c  guaacc uguaaa uauucc 
   ccuguu        a     g ug      u      c       

Deep sequencing

619 reads, 63 reads per million, 27 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 16191254-16191339 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000044EC9C_7227
• miRBase Tracker:MI0005844

Mature sequence dme-miR-985-5p

• Accession: MIMAT0020883
• Sequence: 16 - cuggcucauugguacauuucau - 37
• Deep sequencing: 42 reads, 3 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000228BFA_7227

Mature sequence dme-miR-985-3p

• Accession: MIMAT0005502
• Previous IDs: dme-miR-985
• Sequence: 49 - caaauguuccaauggucgggca - 70
• Deep sequencing: 576 reads, 27 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS0000307D34_7227
• Predicted targets:
  • TargetScanFly:dme-miR-985
  • microrna.org:dme-miR-985-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).