Stem-loop sequence dme-mir-986

Accession

MI0005845 (change log)

Description

Drosophila melanogaster miR-986 stem-loop

Gene family

MIPF0000860; mir-986

Literature search

6 open access papers mention dme-mir-986
(20 sentences)

Stem-loop

   caca  ug    u   cau  c       g    ga     guaacug    
5'     cc  aaau acc   cu gaauagc uugu  cugag       cgc 
       ||  |||| |||   || ||||||| ||||  |||||       || a
3'     gg  uuua ugg   ga cuuaucg agcg  gacuc       gcu 
   --cc  gu    u   aau  a       g    gc     -aucuaa    

Deep sequencing

247999 reads, 1.2e+03 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 8444982-8445081 [+]
• Overlapping transcripts:

  sense

  FBtr0088745 ; Cyp4e2-RA; intron 1

Database links

• RNAcentral:URS000079790A_7227
• miRBase Tracker:MI0005845

Mature sequence dme-miR-986-5p

• Accession: MIMAT0005503
• Previous IDs: dme-miR-986
• Sequence: 19 - ucucgaauagcguugugacuga - 40
• Deep sequencing: 247555 reads, 49 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS0000489B87_7227
• Predicted targets:
  • TargetScanFly:dme-miR-986
  • microrna.org:dme-miR-986-5p

Mature sequence dme-miR-986-3p

• Accession: MIMAT0020884
• Sequence: 65 - agcggcgaggcuauucaaguaa - 86
• Deep sequencing: 421 reads, 42 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000045D9B9_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).