Stem-loop dme-mir-997

Accession

MI0005859

Description

Drosophila melanogaster dme-mir-997 precursor miRNA

Literature search

2 open access papers mention dme-mir-997
(2 sentences)

Sequence

522 reads, 336 reads per million, 12 experiments

uuauggauccucuuucaaugaauuuaguaugCCCAAACUCGAAGGAGUUUCAccuccauaagagcgacaguccuggagaaguuaucagagccaaaaaaauucauaugaugaugcauuuuccgucucugaaaacgucuucagcagaaguuguuuuuagcgaagugAAACUCAUUCGAUUUUGAUCAuacuaacgacauuggaugcuuggaucggca
.....(((((...(((((((...((((((((..((((.(((((.(((((((((.((..((((((((((....(((((((.(((.((((((.....(((((.(((......))).)))))....)))))).))).))))))).....))))))))))..)).))))))))).))))).))))..))))))))...))))))).....)))))....

Structure

uuaug     --ucu       aau        CC    C     G         c  ca          -aguc       a   a      ccaaa     u   au 
     gaucc     uucaaug   uuaguaug  CAAA UCGAA GAGUUUCAc uc  uaagagcgac     cuggaga guu ucagag     aaaau cau  g
     |||||     |||||||   ||||||||  |||| ||||| ||||||||| ||  ||||||||||     ||||||| ||| ||||||     ||||| |||   
     cuagg     agguuac   aaucauAC  GUUU AGCUU CUCAAAgug ag  auuuuuguug     gacuucu caa agucuc     uuuua gua  a
-acgg     uucgu       agc        UA    U     A         a  cg          aagac       g   a      -ugcc     c   gu 

Annotation confidence Not enough data

Genome context

chr3R: 19326954-19327168 [-]

Mature dme-miR-997-5p

• Accession: MIMAT0005517
• Description: Drosophila melanogaster dme-miR-997-5p mature miRNA
• Sequence: 32 - CCCAAACUCGAAGGAGUUUCA - 52
• Evidence: experimental ; 454 [1]

Mature dme-miR-997-3p

• Accession: MIMAT0020897
• Description: Drosophila melanogaster dme-miR-997-3p mature miRNA
• Sequence: 165 - AAACUCAUUCGAUUUUGAUCA - 185
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864