Stem-loop sequence dme-mir-1000

Accession MI0005862
Description Drosophila melanogaster miR-1000 stem-loop
Gene family MIPF0000701; mir-1000
Stem-loop 
-------       gc  u  a  u       u a       --       ca 
       gacgcuu  ca ug ua uguccug c cagcagu  auuguaa  c
       |||||||  || || || ||||||| | |||||||  |||||||  u
       cugcgag  gu ac au acggggc g gucguca  ugauauu  a
acgauua       uu  u  a  u       u g       uu       au
Get sequence
Deep sequencing
12676 reads, 44 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3R: 21414581-21414680 [-]
antisense
FBtr0305219 ; msi-RD; intron 2
FBtr0305219 ; msi-RD; intron 2
FBtr0084881 ; msi-RB; intron 4
FBtr0084881 ; msi-RB; intron 4
FBtr0305218 ; msi-RC; intron 4
FBtr0084881 ; msi-RB; intron 4
FBtr0305218 ; msi-RC; intron 4

Mature sequence dme-miR-1000-5p

Accession MIMAT0005520
Previous IDs dme-miR-1000
Sequence

15 -  

auauuguccugucacagcagu

 - 35

Get sequence
Deep sequencing 11571 reads, 43 experiments
Evidence experimental; 454 [1-2], Solexa [2]
Predicted targets

Mature sequence dme-miR-1000-3p

Accession MIMAT0020900
Sequence

60 -  

cugcugggucggggcauuaaca

 - 81

Get sequence
Deep sequencing 1089 reads, 30 experiments
Evidence not experimental
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).