miRBase entry: dme-mir-1000

Stem-loop dme-mir-1000


Accession
MI0005862
Description
Drosophila melanogaster dme-mir-1000 precursor miRNA
Gene family
MIPF0000701; mir-1000

Literature search
4 open access papers mention dme-mir-1000
(5 sentences)

Sequence

30954 reads, 727 reads per million, 46 experiments
gacgcuugccauugAUAUUGUCCUGUCACAGCAGUauuguaacacuauauuauaguuuaCUGCUGGGUCGGGGCAUUAACAuuguugagcgucauuagca
((((((((.((.((.((.(((((((.(.((((((((((((((.......)))))))..))))))).).))))))).)).)).)).)))))))).......

Structure
-------        c  u  A  U       U A       --       ca 
       gacgcuug ca ug UA UGUCCUG C CAGCAGU  auuguaa  c
       |||||||| || || || ||||||| | |||||||  |||||||  u
       cugcgagu gu AC AU ACGGGGC G GUCGUCa  ugauauu  a
acgauua        u  u  A  U       U G       uu       au 


Annotation confidence High
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Genome context
chr3R: 25588859-25588958 [-]

Database links

Mature dme-miR-1000-5p

Accession MIMAT0005520
Description Drosophila melanogaster dme-miR-1000-5p mature miRNA
Sequence 15 - AUAUUGUCCUGUCACAGCAGU - 35
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-1000-3p

Accession MIMAT0020900
Description Drosophila melanogaster dme-miR-1000-3p mature miRNA
Sequence 60 - CUGCUGGGUCGGGGCAUUAACA - 81
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879