miRBase entry: dme-mir-1001

Stem-loop dme-mir-1001


Accession
MI0005863
Description
Drosophila melanogaster dme-mir-1001 precursor miRNA
Gene family
MIPF0001048; mir-1001

Literature search
3 open access papers mention dme-mir-1001
(4 sentences)

Sequence

8803 reads, 150 reads per million, 40 experiments
aagcuggccugucccUGGGUAAACUCCCAAGGAUCAgguggagauugaaucccgAUCCUUGGGUUUCUGCUCUCGGgcaaggucaguagu
..((((((((((((..(((((....((((((((((.((............)).))))))))))....)))))..)))).))))))))...

Structure
-aa        -    cU     AACU          A  uggag 
   gcuggccu gucc  GGGUA    CCCAAGGAUC gg     a
   |||||||| ||||  |||||    |||||||||| ||      
   ugacugga cgGG  CUCGU    GGGUUCCUAg cc     u
uga        a    CU     CUUU          c  uaagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3R: 27642466-27642555 [-]

Database links

Mature dme-miR-1001-5p

Accession MIMAT0005521
Description Drosophila melanogaster dme-miR-1001-5p mature miRNA
Sequence 16 - UGGGUAAACUCCCAAGGAUCA - 36
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-1001-3p

Accession MIMAT0020901
Description Drosophila melanogaster dme-miR-1001-3p mature miRNA
Sequence 55 - AUCCUUGGGUUUCUGCUCUCGG - 76
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864