Stem-loop sequence dme-mir-1017

Accession

MI0005878 (change log)

Description

Drosophila melanogaster miR-1017 stem-loop

Literature search

4 open access papers mention dme-mir-1017
(4 sentences)

Stem-loop

   -----        -a         aaagcuucccauc 
5'      gugaguuu  guggaguuu             g
        ||||||||  |||||||||             c
3'      uacucaaa  caucucgaa             c
   ccccc        cc         agcgcauuaacga 

Deep sequencing

3007 reads, 95.3 reads per million, 43 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 24488612-24488682 [+]
• Overlapping transcripts:

  sense

  FBtr0084639 ; nAcRalpha-96Ab-RA; intron 4

  FBtr0084640 ; nAcRalpha-96Ab-RB; intron 5

Database links

• RNAcentral:URS000068E5D9_7227
• miRBase Tracker:MI0005878

Mature sequence dme-miR-1017-3p

• Accession: MIMAT0005030
• Previous IDs: dme-miR-1017
• Sequence: 46 - gaaagcucuacccaaacucaucc - 68
• Deep sequencing: 3002 reads, 43 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00004BD7E5_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1017
  • microrna.org:dme-miR-1017-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).