Stem-loop cel-mir-1019

Accession

MI0005880

Description

Caenorhabditis elegans cel-mir-1019 precursor miRNA

Sequence

58 reads, 6 reads per million, 11 experiments

GUGAGCAUUGUUCGAGUUUCAUUUUuaauaaaauuuauuuaaaaaCUGUAAUUCCACAUUGCUUUCCAG
(.(((((.(((..(((((.(((((((((..........))))))).)).))))).))).))))).)...

Structure

--- U     U   UC     U  -       uaaa 
   G GAGCA UGU  GAGUU CA UUUUuaa    a
   | ||||| |||  ||||| || |||||||     
   C UUCGU ACA  CUUAA GU aaaaauu    u
GAC U     U   -C     U  C       uauu 

Annotation confidence Not enough data

Comments

The 5' mature sequence was erroneously named mir-803 in [2].

Genome context

chrI: 9361597-9361665 [+]

Mature cel-miR-1019-5p

• Accession: MIMAT0005822
• Description: Caenorhabditis elegans cel-miR-1019-5p mature miRNA
• Sequence: 1 - GUGAGCAUUGUUCGAGUUUCAUUUU - 25
• Evidence: experimental ; 454 [1]

Mature cel-miR-1019-3p

• Accession: MIMAT0005032
• Description: Caenorhabditis elegans cel-miR-1019-3p mature miRNA
• Sequence: 46 - CUGUAAUUCCACAUUGCUUUCCAG - 69
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17589500
   Intronic microRNA precursors that bypass Drosha processing
   "Ruby JG, Jan CH, Bartel DP"
   "Nature (2007) 448:83-86


2. PubMed ID: 18042455
   Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
   "Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M"
   "Mol Cell (2007) 28:598-613