miRBase entry: mdv2-mir-M19

Stem-loop mdv2-mir-M19


Accession
MI0005887
Description
Mareks disease virus type 2 mdv2-mir-M19 precursor miRNA


Sequence

cguguccCCCCUCGGCGGUGUGCACGGgaguaucgggcgccguccuCAUGCCCCCCUCCGAGGGUAGCacg
(((((...(((((((.((.......(((.((((.((((...))))..))))))))).)))))))..)))))

Structure
     ccC       C  UGUGCAC   a    -c    g 
cgugu   CCCUCGG GG       GGg guau  gggc  
|||||   ||||||| ||       ||| ||||  |||| c
gcaCG   GGGAGCC CC       CCC CGUA  ccug  
     -AU       U  -------   -    Cu    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdv2-miR-M19-5p

Accession MIMAT0012541
Description Mareks disease virus type 2 mdv2-miR-M19-5p mature miRNA
Sequence 8 - CCCCUCGGCGGUGUGCACGG - 27
Evidence experimental
Illumina [2]

Mature mdv2-miR-M19-3p

Accession MIMAT0004460
Description Mareks disease virus type 2 mdv2-miR-M19-3p mature miRNA
Sequence 47 - CAUGCCCCCCUCCGAGGGUAGC - 68
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 17459919
    Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
    "J Virol (2007) 81:7164-7170

  2. PubMed ID: 19328516
    MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
    "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
    "Virology (2009) 388:128-136