miRBase entry: mdv2-mir-M27

Stem-loop mdv2-mir-M27


Accession
MI0005895
Description
Mareks disease virus type 2 mdv2-mir-M27 precursor miRNA


Sequence

ucccucCUUCGUCCGGUGUUCGAGGCGugagacuuuuguauugccGCGUCGAGCACCGUGCUGGAGGAagga
(((.((((((((.((((((((((.((((((.((....)).))).))).)))))))))).)).)))))).)))

Structure
   c      -  C          G   -   g  u 
ucc ucCUUC GU CGGUGUUCGA GCG uga ac u
||| |||||| || |||||||||| ||| ||| ||  
agg AGGAGG CG GCCACGAGCU CGc guu ug u
   a      U  U          G   c   a  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdv2-miR-M27-5p

Accession MIMAT0004472
Description Mareks disease virus type 2 mdv2-miR-M27-5p mature miRNA
Sequence 7 - CUUCGUCCGGUGUUCGAGGCG - 27
Evidence experimental
cloned [1], Illumina [2]

Mature mdv2-miR-M27-3p

Accession MIMAT0004473
Description Mareks disease virus type 2 mdv2-miR-M27-3p mature miRNA
Sequence 46 - GCGUCGAGCACCGUGCUGGAGGA - 68
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 17459919
    Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
    "J Virol (2007) 81:7164-7170

  2. PubMed ID: 19328516
    MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
    "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
    "Virology (2009) 388:128-136