miRBase entry: mdv2-mir-M29

Stem-loop mdv2-mir-M29


Accession
MI0005897
Description
Mareks disease virus type 2 mdv2-mir-M29 precursor miRNA


Sequence

ucuUCUUCACGUACCUCUCUAUGGCugcaucuuuauggcCAUAGUGAGGUACGUGUAGGua
...(((.((((((((((.(((((((((........))))))))).)))))))))).)))..

Structure
ucu   U          U         cau 
   UCU CACGUACCUC CUAUGGCug   c
   ||| |||||||||| |||||||||    
   GGA GUGCAUGGAG GAUACcggu   u
-au   U          U         auu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdv2-miR-M29-5p

Accession MIMAT0004476
Description Mareks disease virus type 2 mdv2-miR-M29-5p mature miRNA
Sequence 4 - UCUUCACGUACCUCUCUAUGGC - 25
Evidence experimental
cloned [1], Illumina [2]

Mature mdv2-miR-M29-3p

Accession MIMAT0012545
Description Mareks disease virus type 2 mdv2-miR-M29-3p mature miRNA
Sequence 40 - CAUAGUGAGGUACGUGUAGG - 59
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17459919
    Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
    "J Virol (2007) 81:7164-7170

  2. PubMed ID: 19328516
    MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
    "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
    "Virology (2009) 388:128-136