miRBase entry: ppt-MIR160g

Stem-loop ppt-MIR160g


Accession
MI0005903
Description
Physcomitrella patens ppt-MIR160g precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention ppt-MIR160g
(9 sentences)

Sequence

cucaugaaaucaauggggaauauuggaccUGCCUGGCUCCUUGUAUGCCAucugcgaagcuugacaaaacuauugccaggguacauagcugccaugcagggagucagacagaccguacgucuucccagauuuacaugc
..(((((((((..((((((....(((..(((.(((((((((((((((.((.(((.(.(.((((.(((.....))).)))).).).))).)).))))))))))))))).))).)))......))))))))))).)))).

Structure
cu    -     aa      --auau   ac   C               C  u   c a g    a   a 
  caug aaauc  ugggga      ugg  cUG CUGGCUCCUUGUAUG CA cug g a cuug caa a
  |||| |||||  ||||||      |||  ||| ||||||||||||||| || ||| | | |||| ||| c
  guac uuuag  acccuu      gcc  gac gacugagggacguac gu gau c u ggac guu u
-c    a     --      cugcau   -a   a               c  c   a a g    c   a 


Annotation confidence Not enough data
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Genome context
Chr19: 13800321-13800458 [-]

Database links

Mature ppt-miR160g

Accession MIMAT0005036
Description Physcomitrella patens ppt-miR160g mature miRNA
Sequence 30 - UGCCUGGCUCCUUGUAUGCCA - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769