miRBase entry: ppt-MIR166c

Stem-loop ppt-MIR166c


Accession
MI0005906
Description
Physcomitrella patens ppt-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ppt-MIR166c
(5 sentences)

Sequence

acuuggugcaacaugggacuuuaucguggggaaugccgucuggaccggagcuguguguccacucugcaucaaagcuUCGGACCAGGCUUCAUUCCCCucgagggaguuucauagcagugcuau
...((((((..(((((((((((.(((.((((((((..((((((.((((((((.(((((.......))).)).)))))))).))))))..)))))))).))).)))))))))).)..)))))).

Structure
acu      aa -          a   u        cc      a        g  -   cc 
   uggugc  c augggacuuu ucg ggggaaug  gucugg ccggagcu ug ugu  a
   ||||||  | |||||||||| ||| ||||||||  |||||| |||||||| || |||  c
   aucgug  g uacuuugagg agc CCCCUUAC  CGGACC GGCUucga ac acg  u
--u      ac a          g   u        UU      A        a  u   uc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr06: 13227780-13227902 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR166c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR166c

Accession MIMAT0005039
Description Physcomitrella patens ppt-miR166c mature miRNA
Sequence 77 - UCGGACCAGGCUUCAUUCCCC - 97
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769