miRBase entry: ppt-MIR166d

Stem-loop ppt-MIR166d


Accession
MI0005907
Description
Physcomitrella patens ppt-MIR166d precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ppt-MIR166d
(5 sentences)

Sequence

cauauuagucauaugcggcuuguccuuggggaaugaugauuggaccgaaguuuuuuagcguugguuugcccaauuaaagcuUCGGACCAGGCUUCAUUCCCCucguagaaguugcaugaugaugcaau
.......((((((((((((((.(.(..(((((((((...((((.((((((((((.....(((((.....))))).)))))))))).))))...)))))))))..).).))))))))).))))).....

Structure
cauauua     -         g c uu         uga    a          uuagc     u 
       gucau augcggcuu u c  ggggaauga   uugg ccgaaguuuu     guugg u
       ||||| ||||||||| | |  |||||||||   |||| ||||||||||     ||||| u
       uagua uacguugaa a g  CCCCUUACU   GACC GGCUucgaaa     uaacc g
--uaacg     g         g u cu         UCG    A          ----u     c 


Annotation confidence Not enough data
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Genome context
Chr06: 13227958-13228085 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR166d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR166d

Accession MIMAT0005040
Description Physcomitrella patens ppt-miR166d mature miRNA
Sequence 82 - UCGGACCAGGCUUCAUUCCCC - 102
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769