miRBase entry: ppt-MIR166i

Stem-loop ppt-MIR166i


Accession
MI0005912
Description
Physcomitrella patens ppt-MIR166i precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ppt-MIR166i
(5 sentences)

Sequence

cuuggagauuggaugggacuuugucguggggauugacgcauggcacgaagcuaacauccugagaucaguugcuUCGGACCAGGCUUCAUUCCCCuugccuaaguugcaucauguagugcu
...........((((.(((((.(.((.(((((.(((.((.(((..((((((.((((((....)))..)))))))))..))).)).))).))))).)).).))))).))))..........

Structure
cuuggagauug    g     u u  u     u   c  a   ca      u   --   c 
           gaug gacuu g cg gggga uga gc ugg  cgaagc aac  auc u
           |||| ||||| | || ||||| ||| || |||  |||||| |||  |||  
           cuac uugaa c gu CCCCU ACU CG ACC  GCUucg uug  uag g
-ucgugaugua    g     u c  u     U   U  G   AG      -   ac   a 


Annotation confidence Not enough data
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Genome context
Chr16: 2418753-2418872 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR166i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR166i

Accession MIMAT0005045
Description Physcomitrella patens ppt-miR166i mature miRNA
Sequence 74 - UCGGACCAGGCUUCAUUCCCC - 94
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769