miRBase entry: ppt-MIR529e

Stem-loop ppt-MIR529e


Accession
MI0005925
Description
Physcomitrella patens ppt-MIR529e precursor miRNA
Gene family
MIPF0000388; MIR529

Literature search
2 open access papers mention ppt-MIR529e
(3 sentences)

Sequence

ucagcaauuuacucacucaugcugggaucAGAAGAGAGAGAGUACAGCCCaagagcaaccgcuuaguuggaaugggcugugcucucucucuucugguuccaaccugagugcaugucgguugu
...((((((.((.((((((.(.(((((((((((((((((((((((((((((....((((......))))...))))))))))))))))))))))))))))).).))))))...)).))))))

Structure
uca      u  --u      u c                             agag    cg 
   gcaauu ac   cacuca g ugggaucAGAAGAGAGAGAGUACAGCCCa    caac  c
   |||||| ||   |||||| | |||||||||||||||||||||||||||||    ||||   
   uguugg ug   gugagu c accuuggucuucucucucucgugucgggu    guug  u
---      c  uac      c a                             -aag    au 


Annotation confidence Not enough data
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Genome context
Chr23: 8765009-8765130 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR529e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR529e

Accession MIMAT0005058
Description Physcomitrella patens ppt-miR529e mature miRNA
Sequence 30 - AGAAGAGAGAGAGUACAGCCC - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769