Stem-loop ppt-MIR529g

Accession

MI0005927

Description

Physcomitrella patens ppt-MIR529g precursor miRNA

Gene family

MIPF0000388; MIR529

Literature search

2 open access papers mention ppt-MIR529g
(3 sentences)

Sequence

ucaccuuuuucuacauucaagcugggguuCGAAGAGAGAGAGCACAGUCCcagacuuuucacucacgaccacuuugagugucuuauggugaacaguagucgggcuguacucucucuuuuccagucccuacucgaauguguuucuaucgc
...........(((((((.((.(((((((.((((((((((((.(((((((...(((.((((((...(((.(((...))))))....)))))).)))....))))))).)))))))))))).)).))))))).)))))))..........

Structure

ucaccuuuuuc       a  c     -  C            C       -cag   u      -cac   c   u 
           uacauuc ag ugggg uu GAAGAGAGAGAG ACAGUCC    acu uucacu    gac acu  
           ||||||| || ||||| || |||||||||||| |||||||    ||| ||||||    ||| ||| u
           guguaag uc auccc ga cuuuucucucuc ugucggg    uga aagugg    cug uga  
-cgcuaucuuu       c  -     u  c            a       cuga   c      uauu   -   g 

Annotation confidence Not enough data

Genome context

Chr24: 1643642-1643790 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR529g

Mature ppt-miR529g

• Accession: MIMAT0005060
• Description: Physcomitrella patens ppt-miR529g mature miRNA
• Sequence: 30 - CGAAGAGAGAGAGCACAGUCC - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769