Stem-loop ppt-MIR537d

Accession

MI0005936

Description

Physcomitrella patens ppt-MIR537d precursor miRNA

Gene family

MIPF0000207; MIR537

Literature search

1 open access papers mention ppt-MIR537d
(1 sentences)

Sequence

uugaacaaugucauuaucauacauagacuguagaaacaccugaagcuauugaucucuacuuuguuguaaccgaucuuuauggaaagugcacgaaaauguguaugcugugaucgcacgauuggugacaucaguaacUUGAGGUGUUUCUACAGGCUAcuuaugcuugaugauuaucuua
.........(((((((.((((..(((.((((((((((((((.(((.(((((((.((.(((..(((((...(((((...((((...((((((......)))))).))))))))).))))).))))).))))))).))).)))))))))))))).)))..))))..))))))).......

Structure

uugaacaau       -u    ca   a              g   c       c  u   uu     aac     uuu    aaa      ga 
         gucauua  caua  uag cuguagaaacaccu aag uauugau uc acu  guugu   cgauc   augg   gugcac  a
         |||||||  ||||  ||| |||||||||||||| ||| ||||||| || |||  |||||   |||||   ||||   ||||||   
         uaguagu  guau  AUC GACAUCUUUGUGGA UUc augacua ag ugg  uagca   gcuag   uguc   uaugug  a
--auucuau       uc    uc   G              G   a       c  -   -u     --c     ---    --g      ua 

Annotation confidence Not enough data

Genome context

Chr07: 12177121-12177298 [+]

Mature ppt-miR537d

• Accession: MIMAT0005068
• Description: Physcomitrella patens ppt-miR537d mature miRNA
• Sequence: 136 - UUGAGGUGUUUCUACAGGCUA - 156
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769