miRBase entry: ppt-MIR902d

Stem-loop ppt-MIR902d


Accession
MI0005938
Description
Physcomitrella patens ppt-MIR902d precursor miRNA
Gene family
MIPF0000376; MIR902

Literature search
2 open access papers mention ppt-MIR902d
(2 sentences)

Sequence

aaggauccucccauuugcgcccacuggguUAUGAUGCAGAUUCUUCAUCUacuucacuggagcuuccacaaguggugcaccagAUGAAGGUCUGCAUCGUAGCcgagaggaagcaaauucuucuggacc
..((.(((....((((((..((.((.(((((((((((((((.((((((((....((((...((((....))))))))....))))))))))))))))))))))).)).))..))))))......)))))

Structure
aa  a   --uccc      gc  a  g               U        acuu    gga    c 
  gg ucc      auuugc  cc cu gguUAUGAUGCAGAU CUUCAUCU    cacu   gcuu c
  || |||      ||||||  || || ||||||||||||||| ||||||||    ||||   ||||  
  cc agg      uaaacg  gg ga cCGAUGCUACGUCUG GAAGUAga    gugg   ugaa a
--  -   ucuucu      aa  a  g               -        ccac    ---    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr01: 4328118-4328246 [-]

Database links

Mature ppt-miR902d-5p

Accession MIMAT0005071
Description Physcomitrella patens ppt-miR902d-5p mature miRNA
Sequence 30 - UAUGAUGCAGAUUCUUCAUCU - 50
Evidence experimental
454 [1]

Mature ppt-miR902d-3p

Accession MIMAT0005072
Description Physcomitrella patens ppt-miR902d-3p mature miRNA
Sequence 84 - AUGAAGGUCUGCAUCGUAGC - 103
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769