miRBase entry: ppt-MIR902k

Stem-loop ppt-MIR902k


Accession
MI0005945
Description
Physcomitrella patens ppt-MIR902k precursor miRNA
Gene family
MIPF0000376; MIR902

Literature search
2 open access papers mention ppt-MIR902k
(2 sentences)

Sequence

guugauuuugcugcauagauuaucuuucuauucUAUGUUGCAGAUUCUUCAUUUgccgcucugcugaaugaucauauugcgggugaagcaaACGAAGGAUCUGCAAUAUAAAccagaaaagguaaucguauuuuggccaaua
.........((((.(((((((((((((((....(((((((((((((((((.((((((((.((((..............)))))))..))))).)))))))))))))))))....)).)))))))))).)))..)))).....

Structure
guugauuuu    -c   -          -  auuc                 A     --   u    ugaaug 
         gcug  aua gauuaucuuu cu    UAUGUUGCAGAUUCUUC UUUgc  cgc cugc      a
         ||||  ||| |||||||||| ||    ||||||||||||||||| |||||  ||| ||||       
         cggu  uau cuaauggaaa ga    AUAUAACGUCUAGGAAG Aaacg  gug ggcg      u
----auaac    uu   g          a  ccAA                 C     aa   -    uuauac 


Annotation confidence Not enough data
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Genome context
Chr03: 7481527-7481668 [-]

Database links

Mature ppt-miR902k-5p

Accession MIMAT0005085
Description Physcomitrella patens ppt-miR902k-5p mature miRNA
Sequence 34 - UAUGUUGCAGAUUCUUCAUUU - 54
Evidence experimental
454 [1]

Mature ppt-miR902k-3p

Accession MIMAT0005086
Description Physcomitrella patens ppt-miR902k-3p mature miRNA
Sequence 92 - ACGAAGGAUCUGCAAUAUAAA - 112
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769