miRBase entry: ppt-MIR1223b

Stem-loop ppt-MIR1223b


Accession
MI0005951
Description
Physcomitrella patens ppt-MIR1223b precursor miRNA
Gene family
MIPF0000383; MIR1223


Sequence

uuauaacaacucuccaaggcuggauguccagcaaggguguguggcucuauaaucuagagcuaaagcuagaaauccacugcuguugcgaucgaUUGUAGAGUCAUACACCUCUAcuggccuuccagucuguuugcucacagcuu
................((((((((.(.((((...((((((((((((((((((((.(..((...(((.((.......)))))...))..).))))))))))))))))))))...)))).).))))))))....(((...)))..

Structure
uuauaacaacucucca        u u    caa                    u ga  uaa   u  aa 
                aggcugga g ccag   ggguguguggcucuauaauc a  gc   agc ag  a
                |||||||| | ||||   |||||||||||||||||||| |  ||   ||| ||  u
                ucugaccu c gguc   UCCACAUACUGAGAUGUUag u  cg   ucg uc  c
-uucgacacucguuug        u c    AUC                    c ag  uug   -  ac 


Annotation confidence Not enough data
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Genome context
Chr05: 18717265-18717407 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR1223b

Accession MIMAT0005093
Description Physcomitrella patens ppt-miR1223b mature miRNA
Sequence 93 - UUGUAGAGUCAUACACCUCUA - 113
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769