Stem-loop ppt-MIR1223f

Accession

MI0005955

Description

Physcomitrella patens ppt-MIR1223f precursor miRNA

Gene family

MIPF0000383; MIR1223

Sequence

cgcaaugaaauggaacagcauggagcuucagcaagggugcuugacuuuauaacccggcuuaaauuaaucguggUUGUAGAGUCAUGCACCUCUGcuggcucuccugcuuggacauuauacuugu
.((((((.((((...(((((.((((..((((((.((((((.((((((((((((((((.(((...)))))).))))))))))))).)))))).))))))..))))))).))..)))).)).))))

Structure

c    -  a    gaa  -   u    cu      a      u             -   c   a 
 gcaa ug aaug   ca gca ggag  ucagca gggugc ugacuuuauaacc cgg uua  
 |||| || ||||   || ||| ||||  |||||| |||||| ||||||||||||| ||| ||| a
 uguu au uuac   gu cgu ccuc  ggucGU UCCACG ACUGAGAUGUUgg gcu aau  
-    c  a    -ag  u   -    uc      C      U             u   -   u 

Annotation confidence Not enough data

Genome context

Chr05: 18718219-18718342 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR1223f

Mature ppt-miR1223f

• Accession: MIMAT0005097
• Description: Physcomitrella patens ppt-miR1223f mature miRNA
• Sequence: 74 - UUGUAGAGUCAUGCACCUCUG - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769