miRBase entry: ppt-MIR1023b

Stem-loop ppt-MIR1023b


Accession
MI0005961
Description
Physcomitrella patens ppt-MIR1023b precursor miRNA
Gene family
MIPF0000396; MIR1023


Sequence

gaagcgcggcgggccagcuugcaauuucaugacACACUCUCUCCAUUUCUCUGCcugucaugacuugguugaucgauggagcggugguuuucauugcccgauugaggaucaggaguuggggAGAGAAUUGAAGAGAGUGCAUugugaauugcaagcuccuccuuucuuuucg
((((.(.((.(((..(((((((((((.(((((..((((((((.((.((((((.(((...((..(((((((..(((((((.((((((.....)))))))).))))).))))))).)).))).)))))).)).))))))))..)))))))))))))))))))))...).)))).

Structure
-    c --c  c   cc           u     cA        C  U      G   guc  ga       ga     -  a      g 
 gaag g   gg ggg  agcuugcaauu cauga  CACUCUCU CA UUCUCU Ccu   au  cuugguu  ucgau gg gcggug u
 |||| |   || |||  ||||||||||| |||||  |||||||| || |||||| |||   ||  |||||||  ||||| || |||||| u
 cuuu c   cc ucc  ucgaacguuaa guguU  GUGAGAGA GU AAGAGA ggg   ug  ggacuag  aguua cc cguuac u
g    u uuu  -   --           -     AC        A  U      g   --u  -a       -g     g  -      u 


Annotation confidence Not enough data
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Genome context
Chr01: 15791193-15791364 [-]

Database links

Mature ppt-miR1023b-5p

Accession MIMAT0005104
Description Physcomitrella patens ppt-miR1023b-5p mature miRNA
Sequence 34 - ACACUCUCUCCAUUUCUCUGC - 54
Evidence experimental
454 [1]

Mature ppt-miR1023b-3p

Accession MIMAT0005105
Description Physcomitrella patens ppt-miR1023b-3p mature miRNA
Sequence 122 - AGAGAAUUGAAGAGAGUGCAU - 142
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769