miRBase entry: ppt-MIR1024b

Stem-loop ppt-MIR1024b


Accession
MI0005965
Description
Physcomitrella patens ppt-MIR1024b precursor miRNA
Gene family
MIPF0000406; MIR1024


Sequence

guagacgccuugcaauucaagcagacucuauuaugcggcugccgcggacacuacgugguuuguugugcuucagUCUGGUUGGAUUGUAGGCCUCcgcaaaacuucaugaccaucgcaacuacug
((.((.((((.(((((((((.((((((.......(((((.((((((.......))))))..))))).....)))))).))))))))))))).)).))...........................

Structure
---------------------------  a  c    u         g      cuauuau     -u      ga 
                           gu ga gccu gcaauucaa cagacu       gcggc  gccgcg  c
                           || || |||| ||||||||| ||||||       |||||  ||||||  a
                           cg CU CGGA UGUUAGGUU GUCUga       uguug  uggugc  c
gucaucaacgcuaccaguacuucaaaa  c  C    -         G      --cuucg     uu      au 


Annotation confidence Not enough data
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Genome context
Chr02: 12910626-12910749 [-]

Database links

Mature ppt-miR1024b

Accession MIMAT0005110
Description Physcomitrella patens ppt-miR1024b mature miRNA
Sequence 74 - UCUGGUUGGAUUGUAGGCCUC - 94
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769