miRBase entry: ppt-MIR1030c

Stem-loop ppt-MIR1030c


Accession
MI0005977
Description
Physcomitrella patens ppt-MIR1030c precursor miRNA
Gene family
MIPF0000380; MIR1030


Sequence

uacuccuugcucugcugcaucguaaugcaUCUGCAUCUGCACCUGCACCAcguugugauaggaacaaaacucugucuugcugauucccugcacacaugccuuuguuacccagcauucucgaauacggcgucggugcuauccucagauaaguagaguuguccucacuagguuggugaggugcauaugcagaggcguuacauugcagcugcuuaauauug
........((...((((((..(((((((.(((((((.(((((((.((((((.(.((((..(((.((..((((((.((((((((......((((..(((((((((..............))))...)))))..)))).....)))).))))))))))))))))))).).).)))))))))))).))))))).)))))))..)))))).)).........

Structure
-uacuccuu  ucu      uc       a       C       G     - g u    ua   a  aa      u    -    uucccu    ac     ---    uuaccc 
         gc   gcugca  guaaugc UCUGCAU UGCACCU CACCA c u guga  gga ca  acucug cuug cuga      gcac  augcc   uuug      a
         ||   ||||||  ||||||| ||||||| ||||||| ||||| | | ||||  ||| ||  |||||| |||| ||||      ||||  |||||   ||||       
         cg   cgacgu  cauugcg agacgua acgugga guggu g a cacu  ccu gu  ugagau gaau gacu      cgug  ugcgg   aagc      g
guuauaauu  --u      ua       g       u       -     u g u    --   -  --      -    a    -ccuau    gc     cau    ucuuac 


Annotation confidence Not enough data
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Genome context
Chr13: 13778771-13778988 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR1030c

Accession MIMAT0005125
Description Physcomitrella patens ppt-miR1030c mature miRNA
Sequence 30 - UCUGCAUCUGCACCUGCACCA - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769