miRBase entry: ppt-MIR1031a

Stem-loop ppt-MIR1031a


Accession
MI0005985
Description
Physcomitrella patens ppt-MIR1031a precursor miRNA
Gene family
MIPF0000416; MIR1031


Sequence

acugcgaaauuucuggaucauaaauuugcUCAAUGCUCUCUGGAGCUUCUguguuaccacguuggagagaguguugauuuggacucccugauagggcuuaggcaucuuucagcccuugcuucggguuuucguccuuauuggccucccucauugggccucagaagcuucacagaacauugacuugauuugugacccugugaugaggaag
..(.(...(((.(.((.(((((((((...((((((.(((.(((((((((((.(...(((.....(((.(((.((((((..((((..(((((.((((((.(((...)))..))))))....))))).....))))..))))))))).)))..)))..).))))))))))).))).))))))...))))))))).)).).)))..).)..

Structure
ac g gaa   u u  a         ugc      C   C           u uua   cguug   a   u      uu    ---uc     ---u      -u   c 
  u c   auu c gg ucauaaauu   UCAAUG UCU UGGAGCUUCUg g   cca     gag gag guugau  ggac     ccuga    agggcu  agg  
  | |   ||| | || |||||||||   |||||| ||| ||||||||||| |   |||     ||| ||| ||||||  ||||     |||||    ||||||  ||| a
  a g   uag g cc aguguuuag   aguuac aga acuucgaagac c   ggu     cuc cuc cgguua  ccug     gggcu    ucccga  uuc  
ga g -ag   u u  c         uuc      a   c           u -cg   ---ua   c   -      uu    cuuuu     ucgu      cu   u 


Annotation confidence Not enough data
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Genome context
Chr10: 4980250-4980457 [+]

Database links

Mature ppt-miR1031a

Accession MIMAT0005133
Description Physcomitrella patens ppt-miR1031a mature miRNA
Sequence 30 - UCAAUGCUCUCUGGAGCUUCU - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769