miRBase entry: ppt-MIR1033a

Stem-loop ppt-MIR1033a


Accession
MI0005988
Description
Physcomitrella patens ppt-MIR1033a precursor miRNA
Gene family
MIPF0000385; MIR1033


Sequence

ugaucagauacaauccggcgguggcauugggaauguccaucacaaccugccaacauuccagguuauguUGACGGGUCGUGAUGGGCACUcucagcgucucaugucacaaaaacgcagac
................(((((.(((.((((((.((((((((((.(((((.((((((........)))))).))))).)))))))))).)))))).))).).))))..............

Structure
ugaucagauacaaucc    - u   a      a          a     c      ucc 
                ggcg g ggc uuggga uguccaucac accug caacau   a
                |||| | ||| |||||| |||||||||| ||||| ||||||    
                cugu c cug gacucU ACGGGUAGUG UGGGC GUugua   g
--cagacgcaaaaaca    a u   c      C          C     A      uug 


Annotation confidence Not enough data
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Genome context
Chr04: 11869169-11869287 [+]

Database links

Mature ppt-miR1033a

Accession MIMAT0005136
Description Physcomitrella patens ppt-miR1033a mature miRNA
Sequence 69 - UGACGGGUCGUGAUGGGCACU - 89
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769