Stem-loop ppt-MIR1040

Accession

MI0005999

Description

Physcomitrella patens ppt-MIR1040 precursor miRNA

Sequence

aagaggugaucauauccuuucaguauagaggacguguucauuuguguucacuacucgauguucaagacuaugcuacuugaacaucgaguagUGAACGCAAAUGAACAUGUUCcuucauacagaaagggcuagcacugacaug
..(.((((......(((((((.((((.(((((((((((((((((((((((((((((((((((((((.........)))))))))))))))))))))))))))))))))).))))).)))).)))))))....))))..)...

Structure

-aa -a    aucaua       a    a     -                                  acu 
   g  ggug      uccuuuc guau gagga cguguucauuuguguucacuacucgauguucaag   a
   |  ||||      ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||   u
   c  ucac      gggaaag caua uucCU GUACAAGUAAACGCAAGUgaugagcuacaaguuc   g
gua ag    --gauc       a    c     U                                  auc 

Annotation confidence Not enough data

Genome context

Chr08: 8321356-8321497 [+]

Mature ppt-miR1040

• Accession: MIMAT0005150
• Description: Physcomitrella patens ppt-miR1040 mature miRNA
• Sequence: 92 - UGAACGCAAAUGAACAUGUUC - 112
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769