miRBase entry: ppt-MIR1041

Stem-loop ppt-MIR1041


Accession
MI0006000
Description
Physcomitrella patens ppt-MIR1041 precursor miRNA


Sequence

uggacaagucauuuaucuuuaaguguacuUUUUCGGGUGAGAGUGGUCCUgagaaugauugaccaggaaacauaacuuccucaaaaucauuucaaaaccaccaucaccugaaaaacuacaaacuaagauaaacucuguaaua
...((((((...(((((((....((((.((((((((((((..(((((..(((((.(((((....(((((.......)))))...))))))))))..)))))..)))))))))))).))))....)))))))))).)))....

Structure
-ugg   -   cau       uaag    c            GA     CC     a     gacc     ac 
    aca agu   uuaucuu    ugua uUUUUCGGGUGA  GUGGU  Ugaga ugauu    aggaa  a
    ||| |||   |||||||    |||| ||||||||||||  |||||  ||||| |||||    |||||  u
    ugu uca   aauagaa    acau aaaaaguccacu  cacca  acuuu acuaa    uccuu  a
auaa   c   ---       ucaa    c            ac     aa     -     -aac     ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr08: 3290147-3290288 [+]

Database links

Mature ppt-miR1041

Accession MIMAT0005151
Description Physcomitrella patens ppt-miR1041 mature miRNA
Sequence 30 - UUUUCGGGUGAGAGUGGUCCU - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769