miRBase entry: ppt-MIR1052

Stem-loop ppt-MIR1052


Accession
MI0006011
Description
Physcomitrella patens ppt-MIR1052 precursor miRNA


Sequence

auggaguguguugaauccuuggccguauccaugccgcaaucaguaaaagggagucacgcuguguugugagcacugcagagccagcauucgugagucgauagugauacauauagauugcuugcUUCCUUUUAUUGAUUGUGGUAuagaugcgcuugagugauaccuuguguaac
...(((.((((((..((...(((.(((((.((((((((((((((((((((((((((..((((((.(((..(((((..((..((.......))..))..))))).)))))))))..))...)))))))))))))))))))))))).)))))))).)).))))))))).......

Structure
----aug   u      aa  cuu   c     c                        ---  cg      u   ag     ca  gc  gc 
       gag guguug  uc   ggc guauc augccgcaaucaguaaaagggagu   ca  cugugu gug  cacug  ga  ca  a
       ||| ||||||  ||   ||| ||||| ||||||||||||||||||||||||   ||  |||||| |||  |||||  ||  ||  u
       uuc cauagu  ag   ucg cguag uAUGGUGUUAGUUAUUUUCCUUcg   gu  gauaua cau  gugau  cu  gu  u
caaugug   -      -g  --u   -     a                        uuc  ua      -   -a     ag  ga  gc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr11: 10754740-10754912 [-]

Database links

Mature ppt-miR1052

Accession MIMAT0005169
Description Physcomitrella patens ppt-miR1052 mature miRNA
Sequence 123 - UUCCUUUUAUUGAUUGUGGUA - 143
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769