miRBase entry: ppt-MIR1063b

Stem-loop ppt-MIR1063b


Accession
MI0006023
Description
Physcomitrella patens ppt-MIR1063b precursor miRNA
Gene family
MIPF0000381; MIR1063


Sequence

agaguuacuugugcuucguaguucacuuaCAUCUUGGAGUACUGCAUCUUcagaucugugagucuucgccgccuauugccuucgccaccaugcuugacgaaugguuugaaacugaucacauccaacuugaacggauauccugccccuucauagugcugugauuccguucaagcaguucaguuguccgacaaccauggugugguaggacaguaguacugcuaaggcuuugacauuuugaagaugcagcacuacaagaagugugugagcaacgggcuggauucaagau
.(((((......(((.(((.((((((.(((.(((((.(((.(((((((((((((..((((((((((.((...(((((((((((((.((((((.(((.((.(((..(((((.(((...........((((((((((.((((.((..((....)).)).).))))))))))))))))))))).))).)).))).)))))))))).))).))))))....)).)))))))..))).))))))))))))).))).))))).))).)))))).))))))..))))).....

Structure
----a     acuugu   u   a      u   A     G   A             uc   --       c  -cgc      -   -    c      c   a  a   gu     a   aucacauccaa          u   - u  cc  u 
     gaguu      gcu cgu guucac uaC UCUUG AGU CUGCAUCUUcaga  ugu  gagucuu gc    cuauug ccu ucgc accaug uug cg aug  uugaa cug           cuugaacgga auc c gc  cu c
     |||||      ||| ||| |||||| ||| ||||| ||| |||||||||||||  |||  ||||||| ||    |||||| ||| |||| |||||| ||| || |||  ||||| |||           |||||||||| ||| | ||  ||  
     cuuag      cgg gca cgagug gug agaac uca gacguagaaguuu  aca  uucggaa cg    gaugac gga ggug ugguac aac gc ugu  gacuu gac           gaacuugccu uag g cg  ga a
uagaa     ----gu   -   a      u   a     a   c             -u   gu       u  ucau      a   u    -      c   a  c   -u     -   -----------          -   u u  -u  u 


Annotation confidence Not enough data
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Genome context
Chr02: 14360540-14360825 [+]

Database links

Mature ppt-miR1063b

Accession MIMAT0005183
Description Physcomitrella patens ppt-miR1063b mature miRNA
Sequence 30 - CAUCUUGGAGUACUGCAUCUU - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769