miRBase entry: ppt-MIR1063f

Stem-loop ppt-MIR1063f


Accession
MI0006027
Description
Physcomitrella patens ppt-MIR1063f precursor miRNA
Gene family
MIPF0000381; MIR1063


Sequence

ggagguuuuaaagcucugucgcucacuuaCAUCUUGGAGUACUGCAUCUUcacauucgucagauuuuucuaucuguugucauauccccggaauuuugaaucagguacauaccuagcaucuucagauaagcacgugaucacguucauacggaucagucgcuaacucucuuacggagagcauagugugguuugauaacaguggugcagaagcucugcgaaguugaagaugcagcacuacaagaagugcgugagcgacgggcuauaugaaagac
.....(((((.(((.(((((((((((.(((.(((((.(((.(((((((((((..((((.((((((((((((.(((((((((.(((........((((((..((((....))))......))))))..(((((.(((((.(((....)))))))))).)))..((((((...))))))........))).))))))))))))...))))).))))))))..))))))))))).))).))))).))).))))))))))))))...)))))...

Structure
ggagg     --a   u           u   A     G   A           ca    u    -     ---   u         u   cccggaauuuugaaucagguacauaccuagcaucuucagaua   -  g     a   u 
     uuuua   agc cugucgcucac uaC UCUUG AGU CUGCAUCUUca  uucg caga uuuuu   cua cuguuguca auc                                          agc ac ugauc cgu c
     |||||   ||| ||||||||||| ||| ||||| ||| |||||||||||  |||| |||| |||||   ||| ||||||||| |||                                          ||| || ||||| |||  
     aaagu   ucg ggcagcgagug gug agaac uca gacguagaagu  aagc gucu gaaga   ggu gacaauagu ugg                                          ucg ug acuag gca a
--cag     aua   -           c   a     a   c           ug    -    c     cgu   -         u   -----------------ugugauacgagaggcauucucucaa   c  -     -   u 


Annotation confidence Not enough data
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Genome context
Chr01: 12384999-12385269 [+]

Database links

Mature ppt-miR1063f

Accession MIMAT0005187
Description Physcomitrella patens ppt-miR1063f mature miRNA
Sequence 30 - CAUCUUGGAGUACUGCAUCUU - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769