miRBase entry: ppt-MIR1073

Stem-loop ppt-MIR1073


Accession
MI0006039
Description
Physcomitrella patens ppt-MIR1073 precursor miRNA


Sequence

gcagacugauuuuaacguggaagaaugaacacaUGAAUGAUAUUAACGUCCACGauguaaaucuaaugcagaauuguugcugggauuaacuucaguuucagacacaaaguuaaugacuguggaaacccaguucacuacugugcuacuucgUGGGCGUUAAUACAUUUCAUAuguucacucuaccauucaaucgucuggacu
.(((((.((((.....((((.(((.((((((.(((((((.(((((((((((((((.(((........(((.(...((.((((((.....((.(((((...(((.....)))...))))).))...))))))..))...).)))))).))))))))))))))))).))))).)))))).))).))))..)))))))))....

Structure
---g     u    uuaac    a   a      c     -  A               u   aaucuaau   g auu  -u      auuaa  u     uca   a 
    cagac gauu     gugg aga ugaaca aUGAA UG UAUUAACGUCCACGa gua        gca a   gu  gcuggg     cu caguu   gac c
    ||||| ||||     |||| ||| |||||| ||||| || ||||||||||||||| |||        ||| |   ||  ||||||     || |||||   ||| a
    gucug cuaa     uacc ucu acuugu UACUU AC AUAAUUGCGGGUgcu cau        cgu u   ca  ugaccc     gg gucag   uug a
ucag     -    ---cu    a   c      A     U  -               u   --------   g cau  cu      --aaa  u     uaa   a 


Annotation confidence Not enough data
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Genome context
Chr17: 9265541-9265741 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1073
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR1073-5p

Accession MIMAT0005202
Description Physcomitrella patens ppt-miR1073-5p mature miRNA
Sequence 34 - UGAAUGAUAUUAACGUCCACG - 54
Evidence experimental
454 [1]

Mature ppt-miR1073-3p

Accession MIMAT0005203
Description Physcomitrella patens ppt-miR1073-3p mature miRNA
Sequence 151 - UGGGCGUUAAUACAUUUCAUA - 171
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769