Stem-loop ppt-MIR1076

Accession

MI0006042

Description

Physcomitrella patens ppt-MIR1076 precursor miRNA

Sequence

gcgaaagcuauucaaacgugguguugUAUCACAAGGUGCGAUAAUUGcucgaagacauuggcaguuaagauauuuuagccccaugaaaauguggguuagauguaagaguagaaguguagggauuuguacguaguguuaauguagcugugcauugucaauucugaguuccaaaaucuCCAAGCACUUAUCGCACCCUGcgauacaacauacacaguugcaagauggaa
.......(((((..((((((((((((((((.((.((((((((((.((((.(.(((..((((.(.(((.((...(((((((((((....))).)))))))).......(((.((((......)))).)))....((.(((((((....))))))).))..))))).).))))..))).).)))).)))))))))).)).)))))))))).))).)))....)))))..

Structure

gcgaaag     --ca   -   -          A  A          U    c a   ca    c g   a  --------------------------------------------------------uau        -   g 
       cuauu    aac gug guguugUAUC CA GGUGCGAUAA UGcu g aga  uugg a uua ga                                                           uuuagccc cau a
       |||||    ||| ||| |||||||||| || |||||||||| |||| | |||  |||| | ||| ||                                                           |||||||| |||  
       gguag    uug cac uacaacauag GU CCACGCUAUU ACGA C ucu  aacc u agu cu                                                           agauuggg gua a
-----aa     aacg   a   a          c  C          C    A C   aa    u g   -  uaacuguuacgugucgauguaauugugaugcauguuuagggaugugaagaugagaaugu        u   a 

Annotation confidence Not enough data

Genome context

Chr10: 2060670-2060896 [-]

Mature ppt-miR1076-5p

• Accession: MIMAT0005206
• Description: Physcomitrella patens ppt-miR1076-5p mature miRNA
• Sequence: 27 - UAUCACAAGGUGCGAUAAUUG - 47
• Evidence: experimental ; 454 [1]

Mature ppt-miR1076-3p

• Accession: MIMAT0005207
• Description: Physcomitrella patens ppt-miR1076-3p mature miRNA
• Sequence: 177 - CCAAGCACUUAUCGCACCCUG - 197
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769