miRBase entry: ppt-MIR1079

Stem-loop ppt-MIR1079


Accession
MI0006045
Description
Physcomitrella patens ppt-MIR1079 precursor miRNA


Sequence

ggcuuguuaaaguuuagacugauguuagugacuCACCGAGCUCUUCUUUUUGGAGGugggcacugugauguacgagaagugugaccugcaauaucgaccACCAAAAGAAUAGCUAUGUGGUucauucuuaucauucuaauuuuaagcaagc
.(((((((.(((.(((((.(((((..(((((.((((..((((.(((((((.((.(((.((...((((...((((.....))))...))))...)).))).))))))))).))))..)))).)))))..))))).))))).))).)))))))

Structure
g       a   u     c     uu     c    CG    C       U  A   g  cac    aug    a 
 gcuuguu aag uuaga ugaug  aguga uCAC  AGCU UUCUUUU GG GGu gg   ugug   uacg g
 ||||||| ||| ||||| |||||  ||||| ||||  |||| ||||||| || ||| ||   ||||   |||| a
 cgaacga uuu aaucu acuau  uuacu GGUG  UCGA AAGAAAA CC cca cu   acgu   gugu a
-       a   u     u     uc     U    UA    U       -  A   g  aua    cca    g 


Annotation confidence Not enough data
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Genome context
Chr01: 7516662-7516812 [+]

Database links

Mature ppt-miR1079-5p

Accession MIMAT0005211
Description Physcomitrella patens ppt-miR1079-5p mature miRNA
Sequence 34 - CACCGAGCUCUUCUUUUUGGAGG - 56
Evidence experimental
454 [1]

Mature ppt-miR1079-3p

Accession MIMAT0005212
Description Physcomitrella patens ppt-miR1079-3p mature miRNA
Sequence 100 - ACCAAAAGAAUAGCUAUGUGGU - 121
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769