miRBase entry: smo-MIR159

Stem-loop smo-MIR159


Accession
MI0006050
Description
Selaginella moellendorffii smo-MIR159 precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

uugcagggggagcucccuucaauucaacugaggucggugcgucgcuguuacucgcugcugacucaugcauucgccugacaugcccgcaaccaucaucagaucgugaucaggacacgccgaaaacaugcccgugaucaccuccgcaacucucugaucucggcgagguugaucacagaaucccccgaguuugaggcauggcagccgugugcaugaugcaggagcaggugcggcuucggcucugaacuuccCUUGGAUUGAAGGGAGCUCCCuuccagauuc
.....((((((((((((((((((((((..((((((((.((...(((((..((.(((.(((..((((((((.((.(((.((((((((.(((..((....((((((((((((....((((((............(((((..............)))))))))))...)))))))).).)))....))))))).)))))).))).)).))))))))..))).)))))..)))))....)).))).)))))..))))))))))))))))))))))........

Structure
---uugca                      cu     -   u  -guc     ua  c   g   ac        u  c   a      -  c   ca  auca   - -        gaca      aaacaugcccgu     ccuccg 
        gggggagcucccuucaauucaa  gaggu cgg gc    gcugu  cu gcu cug  ucaugcau cg cug caugcc cg aac  uc    gau c gugaucag    cgccga            gauca      c
        ||||||||||||||||||||||  ||||| ||| ||    |||||  || ||| |||  |||||||| || ||| |||||| || |||  ||    ||| | ||||||||    ||||||            |||||       
        uuCCCUCGAGGGAAGUUAGGUU  cuuca guc cg    cggcg  ga cga gac  aguacgug gc gac guacgg gu uug  ag    cua g cacuaguu    gcggcu            cuagu      a
cuuagacc                      Cc     a   u  gcuu     ug  -   g   gu        u  c   g      a  -   --  cccc   a a        -gga      ------------     cucuca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature smo-miR159

Accession MIMAT0005217
Description Selaginella moellendorffii smo-miR159 mature miRNA
Sequence 249 - CUUGGAUUGAAGGGAGCUCCC - 269
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769