miRBase entry: smo-MIR160a

Stem-loop smo-MIR160a


Accession
MI0006051
Description
Selaginella moellendorffii smo-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
1 open access papers mention smo-MIR160a
(3 sentences)

Sequence

aaaaucacucUGCCUGGCUCCCUGUAUGCCAucugggggggauuuaucagcugacgaugauaagcuccauagcuggcuuacggggagccacgcagaguuucucgcu
......(((((((.((((((((((((.((((.(((..((((.(((((((........))))))))))).))).)))).)))))))))))).)))))))........

Structure
--aaaauc       C            U    u   gg    a       gcu 
        acucUGC UGGCUCCCUGUA GCCA cug  gggg uuuauca   g
        ||||||| |||||||||||| |||| |||  |||| |||||||    
        ugagacg accgaggggcau cggu gau  ccuc gaauagu   a
ucgcucuu       c            u    c   -a    -       agc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature smo-miR160a

Accession MIMAT0005218
Description Selaginella moellendorffii smo-miR160a mature miRNA
Sequence 11 - UGCCUGGCUCCCUGUAUGCCA - 31
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769