miRBase entry: smo-MIR1087

Stem-loop smo-MIR1087


Accession
MI0006071
Description
Selaginella moellendorffii smo-MIR1087 precursor miRNA


Sequence

cguuaacaucuuggaugaagugcuugcgaaagcgcuagcacuaguuugcaaacucuccguaguaaauuaauuucagaaaucaaaggaaaaaaaacacucaccaugguggcuaaagcggcggaauggcuaaaugagcuaguaacuuucacuagcgagucauuugagaccacuuuaacugccauggugaguguuuauuuuccuuugauuuuuguaauugguuuguugcagagaguuUACAGAUUGGUGUUAGUGCUUccacaagcgc
......((((...))))..(((((((.(.(((((((((((((((((((.((((((((.((((((((((((((.(((((((((((((((((.((((((((((((((((((.(((((.(((.((((((((......((((((.......)))))).))))))))..).)).))))).)))))))))))))))))).))))))))))))))))).)))))))))))))).)))))))).))))))))))))))))))).).)))))))

Structure
cguuaacaucuuggaugaa       c a                   c        c              u                 a                  c     c  - -g        aaauga      aa 
                   gugcuug g aagcgcuagcacuaguuug aaacucuc guaguaaauuaauu cagaaaucaaaggaaaa aaacacucaccauggugg uaaag gg c  gaauggcu      gcuagu  c
                   ||||||| | ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| || |  ||||||||      ||||||  u
                   cgcgaac c UUCGUGAUUGUGGUUAGAC Uuugagag cguuguuugguuaa guuuuuaguuuccuuuu uuugugagugguaccguc auuuc cc g  uuuacuga      cgauca  u
-------------------       a c                   A        a              u                 a                  a     a  a ag        -----g      cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature smo-miR1087

Accession MIMAT0005239
Description Selaginella moellendorffii smo-miR1087 mature miRNA
Sequence 235 - UACAGAUUGGUGUUAGUGCUU - 255
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769