miRBase entry: smo-MIR1108

Stem-loop smo-MIR1108


Accession
MI0006095
Description
Selaginella moellendorffii smo-MIR1108 precursor miRNA


Sequence

gugagucuguuuaggcaagugaauauguugcucuuguauuuguugcucuggacuaagguugccgcaaauagccuuuguaaaugccacagugguccugaugagggguuauguuucucagcucaagcccagcaugaccucuagcuccagaccuucuggaagcaaugaccuUGAGCUGAGAGACAUAACCCCccagcaggaucauuaugcugcccccaaacgcuauuugcgcuaaguauguugcacccuacuccagggcagccaauacaagagcaacauauuucacuugccuaaacauguu
.......(((((((((((((((((((((((((((((((((.(((((((((((...(((.(((((((((((((.((((.....((...((((((((((.((.(((((((((((((((((((((((..((............((((((((...))))).)))..))..))))))))))))))))))))))).)).))))))))))..))......)))).))))))))))...........))).)))..))))))))))).))))))))))))))))).))))))))))))))))....

Structure
gugaguc                -                 u           cua   u   -----------          c    -uaaau  cac          a  a                       cc  gcaugaccucua   -     c 
       uguuuaggcaagugaa uauguugcucuuguauu guugcucugga   agg ugc           cgcaaauagc uuug      gc   agugguccug ug gggguuauguuucucagcucaag  ca            gcu ccaga  
       |||||||||||||||| ||||||||||||||||| |||||||||||   ||| |||           |||||||||| ||||      ||   |||||||||| || |||||||||||||||||||||||  ||            ||| ||||| c
       acaaauccguucacuu auacaacgagaacauaa cgacgggaccu   ucc acg           gcguuuaucg aaac      cg   uuacuaggac ac CCCCAAUACAGAGAGUCGAGUuc  gu            cga ggucu  
---uugu                u                 c           -ca   c   uuguaugaauc          c    ccccgu  -ua          g  c                       ca  ----------aa   a     u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Axtell et al. report the alternative production of at least 2 miR/miR* duplexes from the MIR1108 hairpin [1]. The sequence of the most abundant clone is shown here.

Genome context
Unknown

Database links

Mature smo-miR1108

Accession MIMAT0005265
Description Selaginella moellendorffii smo-miR1108 mature miRNA
Sequence 169 - UGAGCUGAGAGACAUAACCCC - 189
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769