miRBase entry: smo-MIR1111

Stem-loop smo-MIR1111


Accession
MI0006098
Description
Selaginella moellendorffii smo-MIR1111 precursor miRNA


Sequence

ugcaacuggcuuccauugcuuaaugucuaugugacuuuagaaccacugccggaaaagguugucgaagguguacauaaucaccacaacagcccgguuuuguuuggucauggcuaugaaacaucccaggagggcuaugaaacaucuuaggaaggugccuauauccugguccgaccagguccugggauguuucauaGCCAUGACUAAGCAGGACCAGacuguugugguuauguccacuucugaugacauuuuuuuggcagugguuucaaaguuacauagacguugagcagugaaagccaguuguugu
.(((((((((((.(((((((((((((((((((((((((.(((((((((((((((((((((((((.(((((.(((((...((((((((((.(.((((((((((((((((((((((((((((((((((((((((.....................))))....((((((...)))))))))))))))))))))))))))))))))))))))))).).))))))))))))))).))))).))))))).)))))))))))))))))).))))))))))))))))))))))))).)))))))))))...

Structure
--u           c                         a                  -       a     u     auc          c c                                    gggcuaugaaacaucuuaggaaggugccuauau      c 
   gcaacuggcuu cauugcuuaaugucuaugugacuuu gaaccacugccggaaaag guugucg aggug acaua   accacaacag c gguuuuguuuggucauggcuaugaaacaucccagga                                 ccuggu  
   ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||   |||||||||| | ||||||||||||||||||||||||||||||||||||                                 |||||| c
   uguugaccgaa gugacgaguugcagauacauugaaa uuuggugacgguuuuuuu caguagu uucac uguau   ugguguuguc G CCAGGACGAAUCAGUACCGauacuuuguaggguccu                                 ggacca  
ugu           a                         c                  a       c     c     ---          a A                                    ---------------------------------      g 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Axtell et al. report the alternative production of at least 2 miR/miR* duplexes from the MIR1111 hairpin [1]. The sequence of the most abundant clone is shown here.

Genome context
Unknown

Database links

Mature smo-miR1111

Accession MIMAT0005268
Description Selaginella moellendorffii smo-miR1111 mature miRNA
Sequence 194 - GCCAUGACUAAGCAGGACCAG - 214
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769