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miRBase |
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Stem-loop sequence rno-mir-871 |
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Accession | MI0006116 (change log) | |||||||||||||
Description | Rattus norvegicus miR-871 stem-loop | |||||||||||||
Gene family | MIPF0000386; mir-743 | |||||||||||||
Literature search |
1 open access papers mention rno-mir-871 | |||||||||||||
Stem-loop |
--u g cc au c a 5' gca ugc uauucag uggugccgguca aug a ||| ||| ||||||| |||||||||||| ||| g 3' cgu aug auagguc accacggucagu uac u acu a ua au a a |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence rno-miR-871-5p |
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Accession | MIMAT0005281 |
Previous IDs | rno-miR-871 |
Sequence |
11 - uauucagauuggugccggucacau - 34 |
Deep sequencing | 6099 reads, 88 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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Mature sequence rno-miR-871-3p |
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Accession | MIMAT0017289 |
Previous IDs | rno-miR-871* |
Sequence |
45 - ugacuggcaccauacuggauaa - 66 |
Deep sequencing | 11099 reads, 99 experiments |
Evidence | experimental; SOLiD [2] |
Predicted targets |
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References |
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1 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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2 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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