miRBase entry: rno-mir-872

Stem-loop rno-mir-872


Accession
MI0006117
Description
Rattus norvegicus rno-mir-872 precursor miRNA
Gene family
MIPF0000399; mir-872

Literature search
7 open access papers mention rno-mir-872
(25 sentences)

Sequence

252935 reads, 297 reads per million, 499 experiments
aacuuguuagAAGGUUACUUGUUAGUUCAGGaccucauuacuuucugccUGAACUAUUGCAGUAGCCUCCUaacugguuau
((((.(((((.((((((((.(((((((((((................)))))))))..)))))))))).))))).))))..

Structure
--    u     A        U  --         accucau 
  aacu guuag AGGUUACU GU  UAGUUCAGG       u
  |||| ||||| |||||||| ||  |||||||||        
  uugg caaUC UCCGAUGA CG  AUCAAGUcc       a
ua    u     C        -  UU         gucuuuc 


Annotation confidence High
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Genome context
chr5: 113657727-113657807 [+]

Database links

Mature rno-miR-872-5p

Accession MIMAT0005282
Description Rattus norvegicus rno-miR-872-5p mature miRNA
Sequence 11 - AAGGUUACUUGUUAGUUCAGG - 31
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-872-3p

Accession MIMAT0005283
Description Rattus norvegicus rno-miR-872-3p mature miRNA
Sequence 50 - UGAACUAUUGCAGUAGCCUCCU - 71
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249