miRBase entry: rno-mir-879

Stem-loop rno-mir-879


Accession
MI0006121
Description
Rattus norvegicus rno-mir-879 precursor miRNA
Gene family
MIPF0000421; mir-879

Literature search
3 open access papers mention rno-mir-879
(4 sentences)

Sequence

128769 reads, 138 reads per million, 431 experiments
uucuagauccAGAGGCUUAUAGCUCUAAGCCuuggauaaaagaggCUUAUGGCUUCAAGCUUUCGGagcuggcgac
..((((.(((.(((((((..((((.((((((((........)))))))).))))..))))))).))).))))....

Structure
--uu    a   A       AU    C        gga 
    cuag ucc GAGGCUU  AGCU UAAGCCuu   u
    |||| ||| |||||||  |||| ||||||||    
    gguc aGG UUUCGAA  UCGG AUUCggag   a
cagc    g   C       CU    U        aaa 


Annotation confidence High
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Genome context
chr4: 21673635-21673710 [-]

Database links

Mature rno-miR-879-5p

Accession MIMAT0005287
Description Rattus norvegicus rno-miR-879-5p mature miRNA
Sequence 11 - AGAGGCUUAUAGCUCUAAGCC - 31
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-879-3p

Accession MIMAT0017291
Description Rattus norvegicus rno-miR-879-3p mature miRNA
Sequence 46 - CUUAUGGCUUCAAGCUUUCGG - 66
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249