Stem-loop rno-mir-880

Accession

MI0006122

Description

Rattus norvegicus rno-mir-880 precursor miRNA

Gene family

MIPF0000433; mir-880

Literature search

4 open access papers mention rno-mir-880
(8 sentences)

Sequence

896 reads, 177 reads per million, 31 experiments

ugcacugcaaUACUCAGAUUGGUAUGAGUCAcuuccuaaaacauguUACUCCAUUCAUUCUGAGUAGAgcaaggcaca
(((..(((..((((((((.(((...((((.((............)).))))...))).))))))))..)))..)))..

Structure

--   ac   aa        U   UAU    C  uuccu 
  ugc  ugc  UACUCAGA UGG   GAGU Ac     a
  |||  |||  |||||||| |||   |||| ||      
  acg  acg  AUGAGUCU ACU   CUCA ug     a
ac   ga   AG        U   UAC    U  uacaa 

Annotation confidence Not enough data

Genome context

chrX: 151281988-151282065 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from rno-mir-880

Mature rno-miR-880-5p

• Accession: MIMAT0017292
• Description: Rattus norvegicus rno-miR-880-5p mature miRNA
• Sequence: 11 - UACUCAGAUUGGUAUGAGUCA - 31
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-880-3p

• Accession: MIMAT0005288
• Description: Rattus norvegicus rno-miR-880-3p mature miRNA
• Sequence: 47 - UACUCCAUUCAUUCUGAGUAGA - 68
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249