miRBase entry: rno-mir-883

Stem-loop rno-mir-883


Accession
MI0006126
Description
Rattus norvegicus rno-mir-883 precursor miRNA
Gene family
MIPF0000389; mir-883

Literature search
3 open access papers mention rno-mir-883
(4 sentences)

Sequence

1221 reads, 299 reads per million, 40 experiments
ugcacucaaUGCUGAGAGAAGUAGCAGUUACUuuuuacucuuaagUAACUGCAACAUCUCUCAGUAUuguaaggcuc
.((...(((((((((((((.((.((((((((((.........)))))))))).)).)))))))))))))....))..

Structure
-u  -acu             A  A          uuu 
  gc    caaUGCUGAGAGA GU GCAGUUACUu   a
  ||    ||||||||||||| || ||||||||||   c
  cg    guUAUGACUCUCU CA CGUCAAUgaa   u
cu  gaau             A  A          uuc 


Annotation confidence High
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Genome context
chrX: 151260703-151260779 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-883
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-883-5p

Accession MIMAT0017294
Description Rattus norvegicus rno-miR-883-5p mature miRNA
Sequence 10 - UGCUGAGAGAAGUAGCAGUUACU - 32
Evidence experimental
SOLiD [2]

Mature rno-miR-883-3p

Accession MIMAT0005290
Description Rattus norvegicus rno-miR-883-3p mature miRNA
Sequence 46 - UAACUGCAACAUCUCUCAGUAU - 67
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249