Stem-loop sequence mmu-mir-467e

Accession

MI0006128

Symbol

MGI:Mir467e

Description

Mus musculus miR-467e stem-loop

Gene family

MIPF0000316; mir-467

Stem-loop

--gc          --------aa     a c             ua 
    cugugugcau          gugug g auguauaugugug  u
    ||||||||||          ||||| | |||||||||||||  a
    gacacacgua          cacac c uacauauacguau  u
uaca          cacauauauc     a a             uu 

Deep sequencing

11937 reads, 85 experiments

Genome context

• Coordinates (GRCm38): chr2: 10505721-10505807 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-467e

• mmu-mir-467a-8: chr2: 10495980-10496062 [+]
• mmu-mir-466b-7: chr2: 10496268-10496355 [+]
• mmu-mir-669p-2: chr2: 10496497-10496583 [+]
• mmu-mir-467a-9: chr2: 10498393-10498475 [+]
• mmu-mir-466b-2: chr2: 10498685-10498766 [+]
• mmu-mir-669a-10: chr2: 10498911-10498997 [+]
• mmu-mir-669a-11: chr2: 10501339-10501425 [+]
• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]

Database links

• ENTREZGENE: 100124448;Mir467e
• MGI: 3718541;Mir467e

Mature sequence mmu-miR-467e-5p

• Accession: MIMAT0005293
• Previous IDs: mmu-miR-467e
• Sequence: 11 - auaagugugagcauguauaugu - 32
• Deep sequencing: 9913 reads, 78 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-467e-5p
  • MICRORNA.ORG:mmu-miR-467e-5p
  • MIRDB:mmu-miR-467e-5p
  • RNA22-MMU:mmu-miR-467e-5p
  • TARGETSCAN-VERT:mmu-miR-467e

Mature sequence mmu-miR-467e-3p

• Accession: MIMAT0005294
• Previous IDs: mmu-miR-467e*
• Sequence: 48 - auauacauacacacaccuauau - 69
• Deep sequencing: 1960 reads, 70 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-467e-3p
  • MICRORNA.ORG:mmu-miR-467e-3p
  • MIRDB:mmu-miR-467e-3p
  • RNA22-MMU:mmu-miR-467e-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).