Stem-loop sequence rno-mir-147

Accession

MI0006130 (change log)

Description

Rattus norvegicus miR-147 stem-loop

Gene family

MIPF0000105; mir-147

Literature search

3 open access papers mention rno-mir-147
(23 sentences)

Stem-loop

   --  u    c   ug   a  c         ---aac   a 
5'   ua gaau uag  gaa ca uucugcaca      ucg u
     || |||| |||  ||| || |||||||||      |||  
3'   au uuua auc  cuu gu aaggcgugu      agu u
   gg  u    c   gu   c  a         gaccgu   u 

Deep sequencing

10958 reads, 1.26 reads per million, 398 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr3: 114775343-114775421 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000073569 ; MGC105649-201; exon 5

Database links

• EntrezGene:Mir147
• miRBase Tracker:MI0006130

Mature sequence rno-miR-147

• Accession: MIMAT0005297
• Sequence: 48 - gugugcggaaaugcuucugcua - 69
• Deep sequencing: 10783 reads, 398 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:rno-miR-147
  • miRDB:rno-miR-147
  • microrna.org:rno-miR-147

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).