Stem-loop sequence rno-mir-190b

Accession

MI0006135 (change log)

Description

Rattus norvegicus miR-190b stem-loop

Gene family

MIPF0000076; mir-190

Literature search

6 open access papers mention rno-mir-190b
(6 sentences)

Stem-loop

   --u   u     u  u            a     -  aaa 
5'    gcu cugug ga auguuugauauu gguug uu   u
      ||| ||||| || |||||||||||| ||||| ||    
3'    uga gacac cu uacaaacuguaa ucaac aa   u
   gag   c     u  -            a     c  gua 

Deep sequencing

12312 reads, 0 reads per million, 450 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr2: 189421137-189421214 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir190b
• miRBase Tracker:MI0006135

Mature sequence rno-miR-190b-5p

• Accession: MIMAT0005302
• Previous IDs: rno-miR-190b
• Sequence: 11 - ugauauguuugauauuagguu - 31
• Deep sequencing: 12300 reads, 450 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-190b-5p
  • miRDB:rno-miR-190b-5p
  • microrna.org:rno-miR-190b-5p

Mature sequence rno-miR-190b-3p

• Accession: MIMAT0017298
• Previous IDs: rno-miR-190b*
• Sequence: 47 - aacuaaaugucaaacauucu - 66
• Deep sequencing: 11 reads, 11 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-190b-3p
  • miRDB:rno-miR-190b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).