Stem-loop sequence rno-mir-380

Accession MI0006141
Description Rattus norvegicus miR-380 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
--acc   a      guu       ga       c   u 
     uga aagaug   gaccaua  acaugcg uac u
     ||| ||||||   |||||||  ||||||| |||  
     acu uucuac   cugguau  uguaugc gug c
cuauu   c      -ac       ga       u   u
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134390988-134391064 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-380
rno-mir-379 6: 134388198-134388282 [+]
rno-mir-411 6: 134389347-134389422 [+]
rno-mir-299b 6: 134389793-134389910 [-]
rno-mir-299a 6: 134389822-134389884 [+]
rno-mir-3579 6: 134390971-134391083 [-]
rno-mir-380 6: 134390988-134391064 [+]
rno-mir-323 6: 134391697-134391782 [+]
rno-mir-758 6: 134391996-134392073 [+]
rno-mir-329 6: 134392666-134392762 [+]
rno-mir-494 6: 134394868-134394950 [+]
rno-mir-679 6: 134395062-134395198 [+]
rno-mir-666 6: 134397021-134397119 [+]
rno-mir-543 6: 134397158-134397237 [+]
rno-mir-495 6: 134399218-134399297 [+]
rno-mir-667 6: 134400500-134400591 [+]
Database links
  • ENTREZGENE: 100314173;Mir380

Mature sequence rno-miR-380-5p

Accession MIMAT0005308
Previous IDs rno-miR-380
Sequence

11 -  

augguugaccauagaacaugcg

 - 32

Get sequence
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-380-3p

Accession MIMAT0017302
Previous IDs rno-miR-380*
Sequence

47 -  

uauguaguaugguccacaucu

 - 67

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).