Stem-loop rno-mir-380

Accession

MI0006141

Description

Rattus norvegicus rno-mir-380 precursor miRNA

Literature search

6 open access papers mention rno-mir-380
(8 sentences)

Sequence

74472 reads, 74 reads per million, 352 experiments

accugaaaagAUGGUUGACCAUAGAACAUGCGcuacuucugugucgUAUGUAGUAUGGUCCACAUCUucucauuauc
...(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).))).....

Structure

--acc   a      GUU       GA       c   u 
     uga aagAUG   GACCAUA  ACAUGCG uac u
     ||| ||||||   |||||||  ||||||| |||  
     acu uUCUAC   CUGGUAU  UGUAUgc gug c
cuauu   c      -AC       GA       u   u 

Annotation confidence High

Genome context

chr6: 133860490-133860566 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-380

Mature rno-miR-380-5p

• Accession: MIMAT0005308
• Description: Rattus norvegicus rno-miR-380-5p mature miRNA
• Sequence: 11 - AUGGUUGACCAUAGAACAUGCG - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-380-3p

• Accession: MIMAT0017302
• Description: Rattus norvegicus rno-miR-380-3p mature miRNA
• Sequence: 47 - UAUGUAGUAUGGUCCACAUCU - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249