Stem-loop sequence rno-mir-410

Accession

MI0006143 (change log)

Description

Rattus norvegicus miR-410 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

9 open access papers mention rno-mir-410
(97 sentences)

Stem-loop

   --ac       g    ug      a  a     - uuu 
5'     uugagga aggu  ucugug ug guucg c   a
       ||||||| ||||  |||||| || ||||| |   u
3'     aacuuuu uccg  agacac au uaagc g   u
   ccau       g    gu      a  a     a uaa 

Deep sequencing

741197 reads, 486 reads per million, 474 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133893997-133894072 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000053680 ; Mir410-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-410

• rno-mir-3592: chr6: 133884161-133884276 [-]
• rno-mir-382: chr6: 133884178-133884257 [+]
• rno-mir-134: chr6: 133884547-133884619 [+]
• rno-mir-668: chr6: 133885141-133885208 [+]
• rno-mir-485: chr6: 133885299-133885377 [+]
• rno-mir-154: chr6: 133888586-133888669 [+]
• rno-mir-496: chr6: 133889283-133889361 [+]
• rno-mir-377: chr6: 133890690-133890761 [+]
• rno-mir-541: chr6: 133892655-133892744 [+]
• rno-mir-409b: chr6: 133893418-133893497 [-]
• rno-mir-409a: chr6: 133893419-133893495 [+]
• rno-mir-412: chr6: 133893571-133893640 [+]
• rno-mir-3578: chr6: 133893672-133893788 [-]
• rno-mir-369: chr6: 133893693-133893771 [+]
• rno-mir-410: chr6: 133893997-133894072 [+]
• rno-mir-3072: chr6: 133898795-133898905 [+]

Database links

• EntrezGene:Mir410
• miRBase Tracker:MI0006143

Mature sequence rno-miR-410-5p

• Accession: MIMAT0017303
• Previous IDs: rno-miR-410*
• Sequence: 11 - agguugucugugaugaguucg - 31
• Deep sequencing: 191 reads, 72 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-410-5p
  • miRDB:rno-miR-410-5p

Mature sequence rno-miR-410-3p

• Accession: MIMAT0005311
• Previous IDs: rno-miR-410
• Sequence: 46 - aauauaacacagauggccugu - 66
• Deep sequencing: 741004 reads, 474 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-410-3p
  • miRDB:rno-miR-410-3p
  • microrna.org:rno-miR-410-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).